<?xml version="1.0" encoding="utf-8"?>

<!-- Experiment here taken from testSub-s.xml -->
<bml:experiment
            xmlns:anSubj="urn:bml/brainml.org:med.cornell.edu/AnimalSubject/1"
            xmlns:bml="urn:bml/brainml.org:internal/BrainML/5"
            xmlns:bmtl="urn:bml/brainml.org:internal/BrainMetaL/1"
            xmlns:xlink="http://www.w3.org/1999/xlink"
            xmlns="urn:bml/brainml.org:med.cornell.edu/Cortex/3"
            id="data-1">

    <!-- optional link; will be given at view and trace level -->
    <bmtl:link xlink:href="#entity-4"
               dest="urn:bml/brainml.org:med.cornell.edu/Cortex/3,recording_site"/>
    <!-- optional link, needed only if experiment sent w/o contributors -->
    <bmtl:link xlink:href="#entity-1"
               dest="urn:bml/brainml.org:med.cornell.edu/Cortex/3,contributor"/>
    <!-- optional link -->
    <bmtl:link xlink:href="#entity-2"
               dest="urn:bml/brainml.org:med.cornell.edu/Cortex/3,contributor"/>
    <!-- optional link -->
    <bmtl:link xlink:href="#entity-3"
               dest="urn:bml/brainml.org:med.cornell.edu/Cortex/3,contributor"/>
    <!-- optional link, needed only if experiment sent w/o references -->
    <bmtl:link xlink:href="#reference-1"
               dest="urn:bml/brainml.org:internal/BrainMetaL/1,citation"/>
    <!-- optional link -->
    <bmtl:link xlink:href="#reference-2"
               dest="urn:bml/brainml.org:internal/BrainMetaL/1,citation"/>
    <!-- optional link, needed only if experiment sent w/o protocol -->
    <bmtl:link xlink:href="#method-1"
               dest="urn:bml/brainml.org:med.cornell.edu/Cortex/3,protocol"/>
    <bml:label>Snowball detection</bml:label>
    <bml:annotation>
        This experiment examines the ability of the animal
        to detect snowballs placed in its hand.  Neural firing in
        somatosensory areas is examined.
    </bml:annotation>

    <!-- *************************************************
         - contributors
         ************************************************* -->

    <bml:contributor id="entity-1">
        <!-- optional link in submission; needed in response to a query for
             people and experiments they've been primary contributor for -->
        <bmtl:first>Adrian</bmtl:first>
        <bmtl:last>Robert</bmtl:last>
        <bmtl:email>arobert@med.cornell.edu</bmtl:email>
        <bmtl:phone>212-555-1212</bmtl:phone>
        <bmtl:institution>Cornell University Medical College</bmtl:institution>
        <bml:link_experiment xlink:href="#data-1"
                         dest="urn:bml/brainml.org:internal/BrainML/5,experiment"/>
    </bml:contributor>

    <bml:contributor id="entity-2">
        <bmtl:first>Jeff</bmtl:first>
        <bmtl:middle>C.</bmtl:middle>
        <bmtl:last>Schmoe</bmtl:last>
        <bmtl:institution>Newcastle University</bmtl:institution>
        <!-- optional link in submission; needed in response to a query for
             people and experiments they've been contributor for -->
        <bml:link_experiment xlink:href="#data-1"
                             dest="urn:bml/brainml.org:internal/BrainML/5,experiment"/>
    </bml:contributor>

    <bml:contributor id="entity-3">
        <bmtl:first>Josh</bmtl:first>
        <bmtl:middle>N.</bmtl:middle>
        <bmtl:last>Schmoe</bmtl:last>
        <bmtl:institution>Warwick University</bmtl:institution>
        <!-- optional link in submission; needed in response to a query for
             people and experiments they've been contributor for -->
        <bml:link_experiment xlink:href="#data-1"
                             dest="urn:bml/brainml.org:internal/BrainML/5,experiment"/>
    </bml:contributor>


    <!-- *************************************************
         - references
         ************************************************* -->

    <bmtl:citation type="article" id="reference-1">
        <!-- optional link in submission; needed in response to a query for
             citations and experiments they've been related to -->
        <bmtl:link xlink:href="#data-1"
                   dest="urn:bml/brainml.org:internal/BrainML/5,experiment"/>
        <!-- PENDING: put outside and link (and accept in validation) -->
        <bmtl:author>
            <bmtl:initials>J. N.</bmtl:initials>
            <bmtl:last>Schmoe</bmtl:last>
        </bmtl:author>
        <bmtl:title>Snowball Science</bmtl:title>
        <bmtl:year>1999</bmtl:year>
        <bmtl:journal>Ann Rev Neuroscience</bmtl:journal>
        <bmtl:volume>22</bmtl:volume>
        <bmtl:pages>12-23</bmtl:pages>
    </bmtl:citation>

    <bmtl:citation type="chapter" id="reference-2">
        <!-- optional link in submission; needed in response to a query for
             citations and experiments they've been related to -->
        <bmtl:link xlink:href="#data-1"
                   dest="urn:bml/brainml.org:internal/BrainML/5,experiment"/>
        <!-- PENDING: put outside and link (and accept in validation) -->
        <bmtl:author>
            <bmtl:initials>J. N.</bmtl:initials>
            <bmtl:last>Schmoe</bmtl:last>
        </bmtl:author>
        <bmtl:title>Snowballs are Great</bmtl:title>
        <bmtl:year>2002</bmtl:year>
        <bmtl:collection_title>Snowballs 2002</bmtl:collection_title>
        <bmtl:pages>1-10</bmtl:pages>
        <bmtl:publisher>K2</bmtl:publisher>
    </bmtl:citation>

    <bmtl:citation type="book" id="reference-3">
        <!-- optional link in submission; needed in response to a query for
             citations and experiments they've been related to -->
        <bmtl:link xlink:href="#data-1"
                   dest="urn:bml/brainml.org:internal/BrainML/5,experiment"/>
        <!-- PENDING: put outside and link (and accept in validation) -->
        <bmtl:author>
            <bmtl:initials>J. N.</bmtl:initials>
            <bmtl:last>Schmoe</bmtl:last>
        </bmtl:author>
        <bmtl:title>Snow and Snowballs</bmtl:title>
        <bmtl:year>2001</bmtl:year>
        <bmtl:publisher>White Press</bmtl:publisher>
    </bmtl:citation>


    <!-- *************************************************
         - protocol
         ************************************************* -->

    <bml:protocol id="method-1">
        <bml:preparation domain="protocol.preparation"
                     xlink:href="urn:bml/brainml.org:med.cornell.edu/Cortex/1/vocabulary.xml#_5136"/>
        <bml:description>This is an awake, behaving animal.</bml:description>
        <bml:stimulus_nudge>
            <bml:effector domain="stimulus nudge.effector"
                  xlink:href="urn:bml/brainml.org:med.cornell.edu/Cortex/1/vocabulary.xml#_6154"/>
            <bml:pattern domain="stimulus nudge.pattern"
                 xlink:href="urn:bml/brainml.org:med.cornell.edu/Cortex/1/vocabulary.xml#_6196"/>
            <bml:location domain="stimulus nudge.location"
                  xlink:href="urn:bml/brainml.org:med.cornell.edu/Cortex/1/vocabulary.xml#_7106"/>
        </bml:stimulus_nudge>
        <!-- optional link in submission; needed in response to a query for
             protocols and experiments they've been related to -->
        <bml:link_experiment xlink:href="#data-1"
                   dest="urn:bml/brainml.org:internal/BrainML/5,experiment"/>
    </bml:protocol>

    <bml:recording_site id="entity-4">
        <bml:identifier>Test multiunit site 1</bml:identifier>
        <bml:recording_location>
            <bml:cytoarchitectural_area
                xlink:href="urn:bml/brainml.org:med.cornell.edu/Cortex/1/vocabulary.xml#_540"/>
        </bml:recording_location>
        <multiunit_recording_source>
            <electrode_tip_diameter xlink:href="urn:bml/brainml.org:internal/BrainMetaL/1/units.xml#micrometer">0.5</electrode_tip_diameter>
            <electrode_n>1</electrode_n>
        </multiunit_recording_source>
        <bml:subject_or_preparation>
            <bml:identifier>Mouse 31-T</bml:identifier>
        </bml:subject_or_preparation>
        <!-- optional link in submission; needed in response to a query for
             sites and experiments they've been related to -->
        <bml:link_experiment xlink:href="#data-1"
                   dest="urn:bml/brainml.org:internal/BrainML/5,experiment"/>
    </bml:recording_site>

    <bml:recording_site id="entity-5">
        <bml:identifier>Test cortical site 2</bml:identifier>
        <bml:recording_location>
            <bml:cytoarchitectural_area
                xlink:href="urn:bml/brainml.org:med.cornell.edu/Cortex/1/vocabulary.xml#_540"/>
        </bml:recording_location>
        <bml:subject_or_preparation>
            <bml:identifier>Mouse 31-T</bml:identifier>
        </bml:subject_or_preparation>
    </bml:recording_site>

    <bml:time_series_view id="data-2" seq="1">
        <bml:label>A ts view</bml:label>
        <bml:horizontal_axis_units
            xlink:href="urn:bml/brainml.org:internal/BrainMetaL/1/units.xml#millisecond"/>

        <bml:time_series_trace id="data-3" seq="1">
            <!-- necessary link, here or at trace level -->
            <bmtl:link xlink:href="#entity-4"
                       dest="urn:bml/brainml.org:med.cornell.edu/Cortex/3,recording_site"/>
            <bml:label>ts trace</bml:label>
            <bml:recording_technique domain="trace.recording technique"
                                 xlink:href="urn:bml/brainml.org:internal/BrainML/1/vocabulary.xml#_60"/>
            <bml:data_class domain="trace.data class"
                        xlink:href="urn:bml/brainml.org:internal/BrainML/1/vocabulary.xml#_513"/>
            <bmtl:datasetC type="decimal" dimensions="1">
                1.0, 23.0, 3.0, 4.0, 5.0, 6.0, 7.0, 8.0, 9.0, 8.0,
                7.0, 6.0, 5.0, 4.0, 5.0, 6.0, 5.0, 4.0, 5.0, 6.0,
                5.0, 6.0, 5.0, 7.0, 4.0, 6.0, 5.0, 3.0, 78.0, 3.0,
                56.0, 8.0, 4.0, 3.0, 45.0, 7.0, 9.0, 4.0, 2.0, 3.0,
                54.0, 4.0, 6.0, 4.0,  7.0
            </bmtl:datasetC>
            <bml:t_start>0.0</bml:t_start>
            <bml:t_rate>1.0</bml:t_rate>
            <bml:stimulus>false</bml:stimulus>
            <bml:vertical_axis_units
                xlink:href="urn:bml/brainml.org:internal/BrainMetaL/1/units.xml#microvolt"/>
        </bml:time_series_trace>

        <bml:spike_train_trace id="data-4" seq="2">
            <!-- necessary link, here or at view level -->
            <bmtl:link xlink:href="#entity-4"
                       dest="urn:bml/brainml.org:med.cornell.edu/Cortex/3,recording_site"/>
            <bml:label>an ss trace</bml:label>
            <bml:recording_technique domain="trace.recording technique"
                                 xlink:href="urn:bml/brainml.org:internal/BrainML/1/vocabulary.xml#_62"/>
            <bml:data_class domain="trace.data class"
                        xlink:href="urn:bml/brainml.org:internal/BrainML/1/vocabulary.xml#_624"/>
            <bmtl:datasetC type="integer" dimensions="1">
                1, 2, 3, 4, 5, 6, 7, 8, 20, 24,
                44, 45, 46, 46.5, 48, 69, 71, 78, 85, 
                90, 91, 92, 92.3, 92.6, 92.9, 99,
            </bmtl:datasetC>
            <bml:t_start>0.0</bml:t_start>
            <bml:t_end>100.0</bml:t_end>
        </bml:spike_train_trace>


        <bml:event_list_trace id="data-5" seq="3">
            <!-- necessary link, here or at view level -->
            <bmtl:link xlink:href="#entity-4"
                       dest="urn:bml/brainml.org:med.cornell.edu/Cortex/3,recording_site"/>
            <!-- necessary link -->
            <bmtl:link xlink:href="#data-4"
                       dest="urn:bml/brainml.org:internal/BrainML/5,trace"/>
            <bml:label>ee trace</bml:label>
            <bml:recording_technique domain="trace.recording technique"
                                 xlink:href="urn:bml/brainml.org:internal/BrainML/1/vocabulary.xml#_58"/>
            <bml:data_class domain="trace.data class"
                        xlink:href="urn:bml/brainml.org:internal/BrainML/1/vocabulary.xml#_521"/>
            <bmtl:labeled_dataset>
                <bmtl:datasetC type="decimal" dimensions="1">
                    1.0, 3.0, 6.0, 9.0
                </bmtl:datasetC>
                <bmtl:datasetC type="string" dimensions="1">
                    'one', 'three', 'six', 'nine'
                </bmtl:datasetC>
            </bmtl:labeled_dataset>
            <bml:t_start>0.0</bml:t_start>
            <bml:t_end>10.0</bml:t_end>
            <bml:stimulus>false</bml:stimulus>
            <bml:link_trace dest="urn:bml/brainml.org:internal/BrainML/5,trace"
                            xlink:href="#_data-4"/>
        </bml:event_list_trace>

    </bml:time_series_view>

    <bml:x_y_view id="data-6" seq="2">
        <bml:label>an xy view</bml:label>
        <bml:horizontal_axis_units
            xlink:href="urn:bml/brainml.org:internal/BrainMetaL/1/units.xml#second"/>
        <bml:horizontal_axis_label>degrees (F)</bml:horizontal_axis_label>
        <bml:vertical_axis_units
            xlink:href="urn:bml/brainml.org:internal/BrainMetaL/1/units.xml#spikes_per_second"/>
        <bml:vertical_axis_label>firing rate</bml:vertical_axis_label>
        <bml:x_y_trace id="data-7" seq="1">
            <!-- necessary link, here or at view level -->
            <bmtl:link xlink:href="#entity-4"
                       dest="urn:bml/brainml.org:med.cornell.edu/Cortex/3,recording_site"/>
            <bml:label>an xy trace</bml:label>
            <bml:recording_technique domain="trace.recording technique"
                                 xlink:href="urn:bml/brainml.org:internal/BrainML/1/vocabulary.xml#_60"/>
            <bml:data_class domain="trace.data class"
                        xlink:href="urn:bml/brainml.org:internal/BrainML/1/vocabulary.xml#_522"/>

            <bmtl:datasetX type="decimal" dimensions="5 2">
                <bmtl:datasetX type="decimal" dimensions="2">
                    <bmtl:datum>1.0</bmtl:datum>
                    <bmtl:datum>2.0</bmtl:datum>
                </bmtl:datasetX>
                <bmtl:datasetX type="decimal" dimensions="2">
                    <bmtl:datum>3.0</bmtl:datum>
                    <bmtl:datum>4.0</bmtl:datum>
                </bmtl:datasetX>
                <bmtl:datasetX type="decimal" dimensions="2">
                    <bmtl:datum>5.0</bmtl:datum>
                    <bmtl:datum>6.0</bmtl:datum>
                </bmtl:datasetX>
                <bmtl:datasetX type="decimal" dimensions="2">
                    <bmtl:datum>3.0</bmtl:datum>
                    <bmtl:datum>3.0</bmtl:datum>
                </bmtl:datasetX>
                <bmtl:datasetX type="decimal" dimensions="2">
                    <bmtl:datum>10.0</bmtl:datum>
                    <bmtl:datum>100.0</bmtl:datum>
                </bmtl:datasetX>
            </bmtl:datasetX>
        </bml:x_y_trace>
    </bml:x_y_view>

    <bml:histogram_view id="data-8" seq="3">
        <bml:label>a histo view</bml:label>
        <bml:horizontal_axis_units
            xlink:href="urn:bml/brainml.org:internal/BrainMetaL/1/units.xml#second"/>
        <bml:horizontal_axis_label>Test Title</bml:horizontal_axis_label>
        <bml:histogram_prebin_trace id="data-9" seq="1">
            <!-- necessary link, here or at view level -->
            <bmtl:link xlink:href="#entity-4"
                       dest="urn:bml/brainml.org:med.cornell.edu/Cortex/3,recording_site"/>
            <bml:label>a histo trace</bml:label>
            <bml:recording_technique domain="trace.recording technique"
                                 xlink:href="urn:bml/brainml.org:internal/BrainML/1/vocabulary.xml#_50"/>
            <bml:data_class domain="trace.data class"
                        xlink:href="urn:bml/brainml.org:internal/BrainML/1/vocabulary.xml#_513"/>
            <bmtl:datasetC type="decimal" dimensions="1">
                2.0, 3.0, 3.0, 445.0, 34.0, 56.0, 46.0, 34.0, 
                434.0, 63.0, 4.0, 6.0, 6234.0, 56.0, 3467.0, 
                4356.0, 463.0, 5.0, 34556.0, 345.0, 2345.0, 
                234.0, 423.0, 34234.0, 564.0, 6.0, 345.0, 47.0, 
                566.0, 46.0, 7324.0, 5.0, 466.0, 1235.0, 4356.0, 
                23.0, 56.0
            </bmtl:datasetC>
            <bml:number_of_trials>345</bml:number_of_trials>
            <bml:vertical_axis_label>aVlabe</bml:vertical_axis_label>
            <bml:vertical_axis_type
                     domain="trace.histogram trace.vertical axis type"
                     xlink:href="vocabulary.xml#_527"/>
            <bml:bin_start>0.0</bml:bin_start>
            <bml:bin_width>1.0</bml:bin_width>
            <bml:number_of_bins>37</bml:number_of_bins>
            <bml:min_max_are_ranges>false</bml:min_max_are_ranges>
        </bml:histogram_prebin_trace>
    </bml:histogram_view>

</bml:experiment>

